Publications by SystemsX.ch (overview)

PUBLICATIONS by YEASTX:

  1. Kotte, O., Heinemann, M.: A divide-and-conquer approach to analyze underdetermined biochemical models. Link to publication
  2. Cinquemani, A.Milias-Argeitis, S.Summers, J.Lygeros: Local identification of piecewise deterministic models of genetic networks. Proceedings of the 12th Hybrid Systems: Computation and Control (HSCC) conference, in R.Majumdar and P.Tabuada (Eds.), Lecture Notes on Computer Science, Vol.5469, pp. 105-119, 2009.
  3. Wagner, A. (2008) Neutralism and selectionism: A network-based reconciliation. /Nature Reviews Genetics/ 9, 965-974. Link to publication
  4. Wagner, A.(2008)  Robustness and evolvability: A paradox resolved. /Proc. Roy. Soc. London Series. B /275/, /91-100; Link to publication
  5. Bragg, J.G., Wagner, A.(2009) Protein material costs: single atoms can make an evolutionary difference. /Trends in Genetics/ 25, 5-8; Link to publication
  6. Ferrada, E., Wagner, A. (2008) Protein robustness promotes evolutionary innovations on large evolutionary time scales /Proc. Roy. Soc. London Series. B/ 275:1595-602; Link to publication
  7. Wright, J., Wagner, A. (2008) The systems biology research tool: Evolvable open-source software. /BMC Systems Biology /2:55; Link to publication
  8. M. J. Herrgard, N. Swainston – 26 others – M. Heinemann, E. Klipp, B.O. Palsson, U. Sauer, S.G. Oliver, P. Mendes, J. Nielsen & D.B. Kell. 2008. A consensus yeast metabolic network obtained from a community approach to systems biology. Nature Biotech. 26: 1155-1160.
  9. Zamboni N & Sauer U (2009). Novel biological insights through metabolomics and 13C-flux analysis. Curr. Opin. Microbiol. 12: 553-558.
  10. Kümmel A, Ewald J, Fendt S-M, Jol S, Picotti P, Aebersold R, Sauer U, Zamboni N, Heinemann M. Differential glucose repression in common yeast strains in response to HXK2 deletion. FEMS Yeast Res. in press
  11. Rodrigues, J., Wagner, A. (2009) Evolutionary plasticity andinnovations in complex metabolic reaction networks. /PloS ComputationalBiology /5(12): e1000613.
  12. Wagner, A. (2009) Evolutionary constraints permeate large metabolicnetworks. /BMC Evolutionary Biology/ 9:231
  13. Hafner, M., Koeppl, H., Hasler, M., Wagner, A. (2009) "Glocal"robustness analysis and model discrimination for circadian oscillators./PloS Computational Biology /5(10): e1000534. 
  14. Kaltenbach, H.-M., Dimopoulos S. and Stelling J., : Systems analysis ofcellular networks under uncertainty, FEBS Lett. 583 (24), 2009, pages3923-3930. doi:10.1016/j.febslet.2009.10.074.